To design therapeutic agents to combat the progression of Alzheimer’s disease, it is worthwhile to understand the thermodynamics of destabilizing these aggregates and the features that contribute to their stability
We present a systematic study of several factors that influence the stability of Aβ42 fibrils following in silico mutation
Results indicate that a finite level of hydration around the Asp23−Lys salt bridge is crucial to protofibril stability, while mutation of Phe to glycine has no effect on the binding free energy of the terminal peptide
Packing between Ile and the aliphatic portion of the Lys side chain serves to regulate the level of hydration in the core of the protofibril and rigidify the Asp23−Lys salt bridge
Two additional figures are provided, the first showing the force vs time plots using different pulling rates and the second illustrating the evolution of side-chain contacts as the different protofibrils undergo β-strand twisting over time
The Role of Molecular Simulations in the Development of Inhibitors of Amyloid β-Peptide Aggregation for the Treatment of Alzheimer’s Disease
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